Systems biology
- M. Tomita, Hashimoto K, Takahashi K, Shimizu T, Matsuzaki Y, Miyoshi F, Saito K, Tanida S, Yugi K, Venter JC, Hutchison CA. E-CELL: Software Environment for Whole Cell Simulation. Genome Inform Ser Workshop Genome Inform. 1997;8:147-155. [3]
- ScienceMag.org - Special Issue: Systems Biology, Science, Vol 295, No 5560, March 1, 2002
- Marc Vidal and Eileen E. M. Furlong. Nature Reviews Genetics 2004 From OMICS to systems biology
- Marc Facciotti, Richard Bonneau, Leroy Hood and Nitin Baliga. Current Genomics 2004 Systems Biology Experimental Design - Considerations for Building Predictive Gene Regulatory Network Models for Prokaryotic Systems
- Katia Basso, Adam A Margolin, Gustavo Stolovitzky, Ulf Klein, Riccardo Dalla-Favera, Andrea Califano, (2005) "Reverse engineering of regulatory networks in human B cells". Nat Genet;37(4):382-90
- Mario Jardon Systems Biology: An Overview - a review from the Science Creative Quarterly, 2005
- Johnjoe McFadden, Guardian.co.uk - 'The unselfish gene: The new biology is reasserting the primacy of the whole organism - the individual - over the behaviour of isolated genes', The Guardian (May 6, 2005)
- Pharoah, M.C. (online). Looking to systems theory for a reductive explanation of phenomenal experience and evolutionary foundations for higher order thought Retrieved Jan, 15 2008.
- WTEC Panel Report on International Research and Development in Systems Biology (2005)
- E. Werner, "The Future and Limits of Systems Biology", Science STKE 2005, pe16 (2005).
- Francis J. Doyle and Jörg Stelling, "Systems interface biology" J. R. Soc. Interface Vol 3, No 10 2006
- Kahlem, P. and Birney E. (2006). "Dry work in a wet world: computation in systems biology." Mol Syst Biol 2: 40.
- E. Werner, "All systems go", "Nature" vol 446, pp 493-494, March 29, 2007. (Review of three books (Alon, Kaneko, and Palsson) on systems biology.)
- Santiago Schnell, Ramon Grima, Philip K. Maini, "Multiscale Modeling in Biology", American Scientist, Vol 95, pages 134-142, March-April 2007.
- TS Gardner, D di Bernardo, D Lorenz and JJ Collins. "Inferring genetic networks and identifying compound of action via expression profiling." Science 301: 102-105 (2003).
- Jeffery C. Way and Pamela A. Silver, Why We Need Systems Biology
- H.S. Wiley, "Systems Biology - Beyond the Buzz." The Scientist. June 2006.]
- Nina Flanagan, "Systems Biology Alters Drug Development." Genetic Engineering & Biotechnology News, January 2008
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References
- ^ Snoep J.L. and Westerhoff H.V.; Alberghina L. and Westerhoff H.V. (Eds.) (2005.). "From isolation to integration, a systems biology approach for building the Silicon Cell". Systems Biology: Definitions and Perspectives: p7, Springer-Verlag.
- ^ Systems Biology - the 21st Century Science.
- ^ Sauer, U. et al. (17 April 2007). "Getting Closer to the Whole Picture". Science 316: 550. doi:. PMID 17463274.
- ^ Denis Noble (2006). The Music of Life: Biology beyond the genome. Oxford University Press. ISBN 978-0199295739. p21
- ^ Systems Biology: Modelling, Simulation and Experimental Validation.
- ^ Kholodenko B.N., Bruggeman F.J., Sauro H.M.; Alberghina L. and Westerhoff H.V.(Eds.) (2005.). "Mechanistic and modular approaches to modeling and inference of cellular regulatory networks". Systems Biology: Definitions and Perspectives: p143, Springer-Verlag.
- ^ Hodgkin AL, Huxley AF (1952). "A quantitative description of membrane current and its application to conduction and excitation in nerve.". J Physiol 117: 500-544. PMID 12991237.
- ^ Le Novere (2007). "The long journey to a Systems Biology of neuronal function". BMC Systems Biology 1: 28.
- ^ Noble D (1960). "Cardiac action and pacemaker potentials based on the Hodgkin-Huxley equations". Nature 188: 495-497. PMID 13729365.
- ^ Mesarovic, M. D. (1968). Systems Theory and Biology. Springer-Verlag.
- ^ "A Means Toward a New Holism" . Science 161 (3836): 34-35. doi:.
- ^ Working the Systems.
- ^ Gardner, TS; di Bernardo D, Lorenz D and Collins JJ (04 Jul 2003). "Inferring genetic networks and identifying compound of action via expression profiling". Science 301: 102-1005. doi:. PMID 12843395.
- ^ di Bernardo, D; Thompson MJ, Gardner TS, Chobot SE, Eastwood EL, Wojtovich AP, Elliot SJ, Schaus SE and Collins JJ (Mar 2005). "Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks". Nature Biotechnology 23: 377-383. doi:. PMID 15765094.
- ^ (such as Gaggle [1], or SBW [2]),
- ^ Werner, E. (March 29, 2007). "All systems go". Nature 446: 493-494. doi:.
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External links
Wikimedia Commons has media related to:
- Molecular Systems Biology - open access journal on systems biology
- BMC Systems Biology - open access journal on systems biology
- IET Systems Biology - not open access journal on systems biology
- BIOREL resource for quantitative estimation of the gene network bias in relation to available database information
- Systems Biology - BioChemWeb.org
- Systems Biology Portal - administered by the Systems Biology Institute
- Applied Industrial Systems Biology - administered by the Competence Center Systems Biology of Bayer Technology Services GmbH
- Systems Biology Portal of Germany - administered by HepatoSys, the German competence network for Systems Biology of liver cells
- Swiss Initiative in Systems Biology
- Studying the World's Most Complex Dynamic Systems By Ricardo Paxson and Kristen Zannell, The MathWorks website.
- Warwick University Systems Biology Doctoral Training Centre - offering EPSRC grants for select individuals to study Systems Biology at MSc and then PhD level.
- Systems Biology at Boston University
- Systems Biology and Bioinformatics at Rostock University, Germany
- Systems Biology at Pacific Northwest National Laboratory
- BaSysBio (Bacillus Systems Biology) - European integrated project on Bacillus Systems Biology
- Systems & Network Biology at ICR, London, UK.
- Systems Biology Masters Programme at the University of Aberdeen, Scotland, UK.
- Systems Biology Toolbox 2 for MATLAB: User-friendly MATLAB toolbox for modeling, simulation, and analysis of biochemical systems. Includes powerful simulation and parameter estimation methods.
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